Gene

Gene:

NLRP4 (official gene symbol)

Other symbol:

NLRP4

CT family:

CT58

CT identifier:

CT58

Aliases from NCBI:

CLR19.5 , FLJ32126 , NALP4 , PAN2 , PYPAF4 , RNH2

RefSeq

Nucleotide : NM_134444.4

Gene Identification

NLRP4 was identified by “in silico” methods (Fiorentino et al., 2002 PMID: 12093792; Chen et al., 2005 PMID: 15905330).

Gene structure and chromosomal localization

Chromosome band: 19q13.42

See this gene in the UCSC Genome Browser :

See this gene in the NCBI Map Viewer Genome Browser :

Exon-intron structure and splicing variants

Splicing variants documented by RefSeqs:

SNPs

Show

ACCESSION	ALLELES	HET	SE_HET	FXN_CLASS	RESIDUE	AA_POSITION	VALIDATED
rs1872438	A/T	0	0	missense	K	632	YES
rs1872438	A/T	0	0	reference	I	632	YES
rs1918496	A/C	0.287389	0.247188	missense	I	178	YES
rs1918496	A/C	0.287389	0.247188	reference	L	178	YES
rs1918496	A/C	0.287389	0.247188	reference	I	178	YES
rs1918496	A/C	0.287389	0.247188	missense	L	178	YES
rs3886175	C/T	0	0	reference	V	910	YES
rs3886175	C/T	0	0	coding-synonymous	V	910	YES
rs7310592	A/G	0	0	reference	L	168	YES
rs7310592	A/G	0	0	coding-synonymous	L	168	YES
rs11171803	C/T	0.0784186	0.181824	reference	A	556	YES
rs11171803	C/T	0.0784186	0.181824	coding-synonymous	A	556	YES
rs11558139	A/G	0	0	missense	N	31	YES
rs11558139	A/G	0	0	reference	S	31	YES
rs11558142	C/T	0	0	missense	H	369	YES
rs11558142	C/T	0	0	reference	R	369	YES
rs34174579	A/G	0.0499671	0.149956	reference	A	15	YES
rs34174579	A/G	0.0499671	0.149956	coding-synonymous	A	15	YES
rs34404784	A/C	0.0259695	0.110952	missense	M	796	NO
rs34404784	A/C	0.0259695	0.110952	reference	I	796	NO
rs302453	A/T	0.39787	0.20158	reference	Q	924	YES
rs302453	A/T	0.39787	0.20158	missense	L	924	YES
rs302456	G/T	0.396223	0.202778	coding-synonymous	L	968	YES
rs302456	G/T	0.396223	0.202778	reference	L	968	YES
rs379327	A/G	0.208345	0.246505	reference	H	468	YES
rs379327	A/G	0.208345	0.246505	coding-synonymous	H	468	YES
rs395503	A/G	0.499971	0.00378777	reference	I	151	YES
rs395503	A/G	0.499971	0.00378777	coding-synonymous	I	151	YES
rs421810	A/G	0.499959	0.00454527	reference	A	277	YES
rs421810	A/G	0.499959	0.00454527	coding-synonymous	A	277	YES
rs441827	C/T	0.499971	0.00379496	reference	T	143	YES
rs441827	C/T	0.499971	0.00379496	missense	A	143	YES
rs441827	C/T	0.499971	0.00379496	missense	T	143	YES
rs441827	C/T	0.499971	0.00379496	reference	A	143	YES
rs12462372	A/G	0.222176	0.248447	missense	H	707	YES
rs12462372	A/G	0.222176	0.248447	reference	R	707	YES
rs12975929	C/T	0.317902	0.240602	reference	D	983	YES
rs12975929	C/T	0.317902	0.240602	coding-synonymous	D	983	YES
rs16986718	A/G	0.411904	0.190492	coding-synonymous	T	184	YES
rs16986718	A/G	0.411904	0.190492	reference	T	184	YES
rs17857373	C/G	0.0304734	0.119616	missense	D	382	YES
rs17857373	C/G	0.0304734	0.119616	reference	E	382	YES
rs17857374	A/C	0.0878636	0.190294	missense	Q	389	YES
rs17857374	A/C	0.0878636	0.190294	reference	P	389	YES
rs34062458	A/G	0.0973044	0.19795	coding-synonymous	P	270	YES
rs34062458	A/G	0.0973044	0.19795	reference	P	270	YES
rs34627915	A/G	0.0253123	0.109615	reference	H	638	NO
rs34627915	A/G	0.0253123	0.109615	missense	R	638	NO
rs35079526	C/T	0.0259695	0.110952	reference	D	427	NO
rs35079526	C/T	0.0259695	0.110952	coding-synonymous	D	427	NO
rs36071978	A/G	0.0253123	0.109615	coding-synonymous	T	778	NO
rs36071978	A/G	0.0253123	0.109615	reference	T	778	NO

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