SAGE(short, 10 nt tags) Show
SAGE(long, 17 nt tags) Show
MPSS (short, 13 nt tags) Show
EST Show
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The figures shown in this section represent a standardized analysis of all reported CT-antigens in the same set of mRNA preparations from
normal human tissues and a selection of human cancer cell lines. The analysis was done by RT-PCR using the primer pairs indicated for each gene.
A total of 1.0 �g of RNA was reverse-transcribed into cDNA using the Omniscript RT kit (Qiagen, Valencia, CA) using oligo (dT)18 primers
(Invitrogen, Carlsbad, CA). JumpStart REDTaq� ReadyMix-(Sigma Aldrich, St. Louis,MO) was used for amplification according to the manufacturer's
instructions. Samples were amplified with a precycling hold at 95oC for 3 min, followed by 35 specific cycles of denaturation at 95oC
for 15 seconds,annealing for 30 seconds (10 cycles at 60oC, 10 cycles at 58oC and 15 cycles at 56oC) and extension at 72oC for 30 seconds followed by a final
extension step at 72oC for 7 minutes. The RT-PCR products were run on 1.5% agarose gels and stained by ethidium bromide. |
Tissue | Methodology | PMID |
---|---|---|
Testis | Northern blot | 12039054 |
Cartilage | Northern blot | 12039054 |
Testis | RT-PCR | 18395366 |
Pancreas | RT-PCR | 20726502 |
Skeletal muscle | RT-PCR | 20726502 |
Placenta | RT-PCR | 20726502 |
Liver | RT-PCR | 20726502 |
Heart | RT-PCR | 20726502 |
Lung | RT-PCR | 20726502 |
Brain | RT-PCR | 20726502 |
Kidney | RT-PCR | 20726502 |
Spleen | RT-PCR | 20726502 |
Thymus | RT-PCR | 20726502 |
Prostate | RT-PCR | 20726502 |
Testis | RT-PCR | 20726502 |
Ovary | RT-PCR | 20726502 |
Small intestine | RT-PCR | 20726502 |
Leukocytes | RT-PCR | 20726502 |
Colon | RT-PCR | 20726502 |
Sarcoma Show
Tumor Subtype | Sample type | Frequency | Methodology | PMID |
---|---|---|---|---|
Chondrosarcoma |
0/5 (0%)(Benign/low grade) | Northern blot | 12039054 | |
Chondrosarcoma |
3/12 (25%)(Intermediate/high grade) | Northern blot | ||
Soft tissue sarcoma |
1/6 (17%) | Northern blot |
Origin tissue | Cell Line ID | Frequency | Methodology | PMID |
---|---|---|---|---|
Leukemia | K562 | 1/1 (100%) | Northern blot | 12039054 |
Lymphoma (Diffuse large B-cell lymphoma) | OCI-Ly3 OCI-Ly10 HLY-1 SU-DHL-6 SU-DHL-10 DB MIEU LIB SU-DHL-4 |
9/9 (100%) | RT-PCR | 20726502 |
Melanoma | Sk-Mel-37 Sk-Mel-29 Sk-Mel-28 |
3/5 (60%) | RT-PCR | 18395366 |
Melanoma | RW248 RW617 RW668 RW1816 |
4/4 (100%) | Northern blot | 12039054 |
Sarcoma (Chondrosarcoma) | FS 105KC 4BG |
3/8 (37%) | Northern blot | 12039054 |
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