Gene

Gene:

SPAG9 (official gene symbol)

Other symbol:

SPAG9

CT family:

CT89

CT identifier:

CT89

Aliases from NCBI:

FLJ13450 , FLJ14006 , FLJ26141 , FLJ34602 , HLC4 , HSS , JLP , KIAA0516 , MGC117291 , MGC14967 , MGC74461 , PHET , PIG6

RefSeq

Nucleotide : NM_001130528.2 | NM_003971.5

Gene Identification

SPAG9 was identified by molecular methods (Shankar et al., 1998 PMID: 9480848; Garg et al., 2007 PMID: 17332284).

Gene structure and chromosomal localization

SPAG9, a single copy gene mapped to the human chromosome 17q21.33 (Jagadish et al., 2005 PMID: 15693750). The 2.5 kb cDNA contains five direct repeats, three mirror repeats, three possible stem loop structures and three unique palindromic motifs located at functionally relevant positions (Shankar et al., 1998 PMID: 9480848).

Chromosome band: 17q21.33

See this gene in the UCSC Genome Browser :

See this gene in the NCBI Map Viewer Genome Browser :

Exon-intron structure and splicing variants

Splicing variants documented by RefSeqs:

SNPs

Show

ACCESSION	ALLELES	HET	SE_HET	FXN_CLASS	RESIDUE	AA_POSITION	VALIDATED
rs2302285	C/T	0.028702	0.116307	coding-synonymous	R	534	YES
rs2302285	C/T	0.028702	0.116307	reference	R	534	YES
rs6504692	A/G	0.0783908	0.181797	reference	L	433	YES
rs6504692	A/G	0.0783908	0.181797	coding-synonymous	L	433	YES
rs9896965	C/T	0.13366	0.22128	reference	N	1305	YES
rs9896965	C/T	0.13366	0.22128	missense	S	1305	YES
rs34733235	C/G	0.0259695	0.110952	reference	H	242	NO
rs34733235	C/G	0.0259695	0.110952	missense	D	242	NO
rs35028363	A/G	0.0289792	0.116832	missense	N	193	NO
rs35028363	A/G	0.0289792	0.116832	reference	S	193	NO

CTDatabase

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