SAGE(short, 10 nt tags) Show
SAGE(long, 17 nt tags) Show
MPSS (short, 13 nt tags) Show
EST Show
| Tissue | Methodology | PMID |
|---|---|---|
| Testis | Oligonucleotide microarray | 11751535 |
| Testis | RT-PCR | 7927540 |
| Fetal keratinocytes | qRT-PCR | 17993289 |
| Keratinocytes | qRT-PCR | 17993289 |
| Differentiated embryonic stem cells (hESC) | RT-PCR | 18611917 |
Hematologic malignacies Show
| Tumor Subtype | Sample type | Frequency | Methodology | PMID |
|---|---|---|---|---|
| Myeloma |
Newly diagnosed patient | 144/320 (45%) | Microarray | 21738656 |
| Myeloma |
Relapse patient | 130/264 (49%) | Microarray |
Brain cancer Show
| Tumor Subtype | Sample type | Frequency | Methodology | PMID |
|---|---|---|---|---|
| Medulloblastoma (Pediatric) |
3/11 (27%) | qRT-PCR | 18398575 | |
| Glioma |
0/30 (0%) | RT-PCR | 18240144 |
Hepatobiliary cancer Show
| Tumor Subtype | Sample type | Frequency | Methodology | PMID |
|---|---|---|---|---|
| Hepatocellular carcinoma |
8/22 (38%) | RT-PCR | 10189127 |
Lung cancer Show
| Tumor Subtype | Sample type | Frequency | Methodology | PMID |
|---|---|---|---|---|
| Adenocarcinoma |
2/22 (22%) | RT-PCR | 14512184 | |
| Adenosquamous carcinoma |
0/1 (0%) | RT-PCR | ||
| Large cell carcinoma |
2/6 (33%) | RT-PCR | ||
| Small cell lung carcinoma |
2/4 (50%) | RT-PCR | ||
| Squamous cell carcinoma |
7/13 (54%) | RT-PCR | ||
| Lung carcinoma |
3/12 (25%) | RT-PCR | 12133624 | |
| Adenocarcinoma |
4/38 (10%) | c-DNA microarray | 17208331 | |
| Squamous cell carcinoma |
5/14 (36%) | c-DNA microarray |
Melanocytic lesion Show
| Origin tissue | Cell Line ID | Frequency | Methodology | PMID |
|---|---|---|---|---|
| Adult keratinocyte cell line | KHEK | RT-PCR | 19358718 | |
| Colorectal carcinoma | IR806 SW403 |
2/3 (66%) | RT-PCR | 11750719 |
| Colorectal carcinoma | SK-CO-11 HSR 320 |
RT-PCR | 7927540 | |
| Head and Neck carcinoma | BB49-HNC | 1/1 (100%) | Oligonucleotide microarray | 11751535 |
| Leukemia | K562 | RT-PCR | 7927540 | |
| Leukemia | VLB HL60 |
3/7 (43%) | RT-PCR | 12399967 |
| Lung carcinoma- SCLC | OC1 | 1/1 (100%) | Oligonucleotide microarray | 11751535 |
| Melanoma | MI10221 MZ2-MEL3.0 |
RT-PCR | 7927540 | |
| Melanoma | WM115-A WM1972-A WM1976-A WM3130-A |
4/4 (100%) | RT-PCR | 18205182 |
| Melanoma | Sk-Mel-37 Sk-Mel-29 Sk-Mel-28 Sk-Mel-24 Malme-3M |
5/5 (100%) | RT-PCR | 18395366 |
| Melanoma | LB1751-MEL LB373-MEL LB1448-MEL.2 LB1781-MEL |
4/9 (44%) | Oligonucleotide microarray | 11751535 |
| Melanoma | G361 RPMI7951 KU-MELTC-1 A375 TDMM1 SEK1 |
qRT-PCR | 22707303 | |
| Melanoma stem cells (MSC) | WM115-NA WM1972-NA WM1976-NA WM3130-NA |
4/4 (100%) | RT-PCR | 18205182 |
| Oral squamous cell carcinoma | PCI13-11 PCI1-1 PCI52 PCI68-1 |
4/4 (100%) | RT-PCR | 19358718 |
| Thyroid carcinoma | TT | 1/1 (100%) | Oligonucleotide microarray | 11751535 |
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