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List of genes:

B
- BAGEAlias:BAGE1
- BAGE2
- BAGE3
- BAGE4
- BAGE5
- BRDTAlias:BRD6

E
- EDAG, NDR
- ELOVL4

I
- IGSF11
- IL13RA2
- IMP-3

J
- JARID1BAlias:FLJ10538, FLJ12459, FLJ12491, FLJ16281, FLJ23670, KDM5B, PLU-1, PUT1, RBBP2H1A

K
- KIAA0100

V
- VENTXP1Alias:NA88A, VENTX2P1

Z
- ZNF165Alias:LD65, ZSCAN7
- ZNF645

Gene

Gene:

CASC5 (official gene symbol)

Other symbol:

CASC5

CT family:

CT29

CT identifier:

CT29

Aliases from NCBI:

AF15Q14 , D40 , KIAA1570

RefSeq

Nucleotide : NM_170589.3 | NM_144508.3

Gene Identification

CASC5/AF15q14 was identified by molecular methods - Yeast two hybrid screening (Takimoto et al., 2002 PMID: 12087463).

Gene structure and chromosomal localization

Chromosome band: 15q14

See this gene in the UCSC Genome Browser :

See this gene in the NCBI Map Viewer Genome Browser :

Exon-intron structure and splicing variants

Splicing variants documented by RefSeqs:

SNPs

Show

ACCESSION	ALLELES	HET	SE_HET	FXN_CLASS	RESIDUE	AA_POSITION	VALIDATED
rs2412541	G/T	0.471418	0.116078	missense	A	485	YES
rs2412541	G/T	0.471418	0.116078	reference	S	485	YES
rs2412541	G/T	0.471418	0.116078	missense	A	459	YES
rs2412541	G/T	0.471418	0.116078	reference	S	459	YES
rs2412541	G/T	0.471418	0.116078	reference	A	485	YES
rs2412541	G/T	0.471418	0.116078	missense	S	485	YES
rs2412541	G/T	0.471418	0.116078	reference	A	459	YES
rs2412541	G/T	0.471418	0.116078	missense	S	459	YES
rs7169142	C/T	0	0	missense	S	165	YES
rs7169142	C/T	0	0	reference	L	165	YES
rs7169142	C/T	0	0	missense	S	191	YES
rs7169142	C/T	0	0	reference	L	191	YES
rs7177192	C/G	0.471309	0.116285	missense	T	42	YES
rs7177192	C/G	0.471309	0.116285	reference	R	42	YES
rs7177192	C/G	0.471309	0.116285	reference	T	42	YES
rs7177192	C/G	0.471309	0.116285	missense	R	42	YES
rs8040502	A/G	0.422255	0.181185	missense	R	909	YES
rs8040502	A/G	0.422255	0.181185	reference	G	909	YES
rs8040502	A/G	0.422255	0.181185	missense	R	935	YES
rs8040502	A/G	0.422255	0.181185	reference	G	935	YES
rs8040502	A/G	0.422255	0.181185	reference	R	909	YES
rs8040502	A/G	0.422255	0.181185	missense	G	909	YES
rs8040502	A/G	0.422255	0.181185	reference	R	935	YES
rs8040502	A/G	0.422255	0.181185	missense	G	935	YES
rs8041534	G/T	0.455858	0.141853	coding-synonymous	T	886	YES
rs8041534	G/T	0.455858	0.141853	reference	T	886	YES
rs8041534	G/T	0.455858	0.141853	coding-synonymous	T	860	YES
rs8041534	G/T	0.455858	0.141853	reference	T	860	YES
rs11070285	C/T	0.438606	0.164096	coding-synonymous	N	1143	YES
rs11070285	C/T	0.438606	0.164096	reference	N	1143	YES
rs11070285	C/T	0.438606	0.164096	coding-synonymous	N	1169	YES
rs11070285	C/T	0.438606	0.164096	reference	N	1169	YES
rs11855334	C/T	0.457236	0.139833	reference	V	795	YES
rs11855334	C/T	0.457236	0.139833	coding-synonymous	V	795	YES
rs11855334	C/T	0.457236	0.139833	reference	V	769	YES
rs11855334	C/T	0.457236	0.139833	coding-synonymous	V	769	YES
rs11858113	C/T	0.447357	0.153461	missense	T	597	YES
rs11858113	C/T	0.447357	0.153461	reference	M	597	YES
rs11858113	C/T	0.447357	0.153461	missense	T	571	YES
rs11858113	C/T	0.447357	0.153461	reference	M	571	YES
rs11858113	C/T	0.447357	0.153461	reference	T	597	YES
rs11858113	C/T	0.447357	0.153461	missense	M	597	YES
rs11858113	C/T	0.447357	0.153461	reference	T	571	YES
rs11858113	C/T	0.447357	0.153461	missense	M	571	YES
rs12901852	C/T	0	0	coding-synonymous	I	1879	YES
rs12901852	C/T	0	0	reference	I	1879	YES
rs12901852	C/T	0	0	coding-synonymous	I	1853	YES
rs12901852	C/T	0	0	reference	I	1853	YES
rs12911738	A/G	0.442115	0.159974	reference	T	112	YES
rs12911738	A/G	0.442115	0.159974	missense	A	112	YES
rs12911738	A/G	0.442115	0.159974	reference	T	86	YES
rs12911738	A/G	0.442115	0.159974	missense	A	86	YES
rs12911738	A/G	0.442115	0.159974	missense	T	86	YES
rs12911738	A/G	0.442115	0.159974	reference	A	86	YES
rs12911738	A/G	0.442115	0.159974	missense	T	112	YES
rs12911738	A/G	0.442115	0.159974	reference	A	112	YES
rs16970874	A/G	0.177648	0.239301	reference	T	69	YES
rs16970874	A/G	0.177648	0.239301	missense	A	69	YES
rs16970911	A/G	0.055842	0.157489	reference	T	1446	YES
rs16970911	A/G	0.055842	0.157489	missense	A	1446	YES
rs16970911	A/G	0.055842	0.157489	reference	T	1472	YES
rs16970911	A/G	0.055842	0.157489	missense	A	1472	YES
rs17747633	A/G	0.274776	0.248769	reference	K	1284	YES
rs17747633	A/G	0.274776	0.248769	missense	E	1284	YES
rs17747633	A/G	0.274776	0.248769	reference	K	1258	YES
rs17747633	A/G	0.274776	0.248769	missense	E	1258	YES
rs34272097	A/G	0.0253123	0.109615	reference	S	249	NO
rs34272097	A/G	0.0253123	0.109615	missense	G	249	NO
rs34272097	A/G	0.0253123	0.109615	reference	S	275	NO
rs34272097	A/G	0.0253123	0.109615	missense	G	275	NO
rs34758606	A/G	0.075831	0.179347	coding-synonymous	A	1295	YES
rs34758606	A/G	0.075831	0.179347	reference	A	1295	YES
rs34758606	A/G	0.075831	0.179347	coding-synonymous	A	1269	YES
rs34758606	A/G	0.075831	0.179347	reference	A	1269	YES
rs35146555	A/G	0.0253123	0.109615	reference	M	150	NO
rs35146555	A/G	0.0253123	0.109615	missense	V	150	NO
rs35146555	A/G	0.0253123	0.109615	reference	M	176	NO
rs35146555	A/G	0.0253123	0.109615	missense	V	176	NO
rs35235972	C/T	0.0605469	0.163118	coding-synonymous	C	458	YES
rs35235972	C/T	0.0605469	0.163118	reference	C	458	YES
rs35235972	C/T	0.0605469	0.163118	coding-synonymous	C	432	YES
rs35235972	C/T	0.0605469	0.163118	reference	C	432	YES
rs35422803	C/G	0.0253123	0.109615	missense	R	1219	NO
rs35422803	C/G	0.0253123	0.109615	reference	G	1219	NO
rs35422803	C/G	0.0253123	0.109615	missense	R	1245	NO
rs35422803	C/G	0.0253123	0.109615	reference	G	1245	NO
rs35625882	C/T	0.0289792	0.116832	reference	N	1729	NO
rs35625882	C/T	0.0289792	0.116832	coding-synonymous	N	1729	NO
rs35625882	C/T	0.0289792	0.116832	reference	N	1703	NO
rs35625882	C/T	0.0289792	0.116832	coding-synonymous	N	1703	NO
rs35818636	A/G	0.027392	0.113779	coding-synonymous	T	1788	NO
rs35818636	A/G	0.027392	0.113779	reference	T	1788	NO
rs35818636	A/G	0.027392	0.113779	coding-synonymous	T	1762	NO
rs35818636	A/G	0.027392	0.113779	reference	T	1762	NO

CTDatabase