mRNA expression
Gene:
XAGE1 (official gene symbol)Other symbol:
XAGE1CT family:
CT12CT identifier:
CT12.1aAliases from NCBI:
GAGED2 , XAGE-1Unified entry for genes XAGE1, XAGE1B, XAGE1C, XAGE1D, XAGE1E (nearly-identical copies)
Gene expression pattern ? : Testis-selective
High-throughput data (expression in cancer samples)
SAGE(short, 10 nt tags) Show
SAGE(long, 17 nt tags) Show
MPSS (short, 13 nt tags) Show
EST Show
Validation by Ludwig Institute of Cancer Research of mRNA expression in normal tissues and cell lines (RT-PCR)
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The figures shown in this section represent a standardized analysis of all reported CT-antigens in the same set of mRNA preparations from
normal human tissues and a selection of human cancer cell lines. The analysis was done by RT-PCR using the primer pairs indicated for each gene.
A total of 1.0 �g of RNA was reverse-transcribed into cDNA using the Omniscript RT kit (Qiagen, Valencia, CA) using oligo (dT)18 primers
(Invitrogen, Carlsbad, CA). JumpStart REDTaq� ReadyMix-(Sigma Aldrich, St. Louis,MO) was used for amplification according to the manufacturer's
instructions. Samples were amplified with a precycling hold at 95oC for 3 min, followed by 35 specific cycles of denaturation at 95oC
for 15 seconds,annealing for 30 seconds (10 cycles at 60oC, 10 cycles at 58oC and 15 cycles at 56oC) and extension at 72oC for 30 seconds followed by a final
extension step at 72oC for 7 minutes. The RT-PCR products were run on 1.5% agarose gels and stained by ethidium bromide. |
Published data of mRNA expression in normal tissues
ShowTissue | Methodology | PMID |
---|---|---|
Testis | qRT-PCR | 16061866 |
Testis | RT-PCR | 10987281 |
Lung | RT-PCR | 10987281 |
Peripheral blood leukocyte | RT-PCR | 10987281 |
Breast | Array blot | 12479262 |
Uterus | Array blot | 12479262 |
Testis | RT-PCR | 14696120 |
Testis | Nested RT-PCR | 11992404 |
Ovary | Nested RT-PCR | 11992404 |
Placenta | Nested RT-PCR | 11992404 |
Testis | RT-PCR | 14738773 |
Placenta | RT-PCR | 14738773 |
Pancreas | RT-PCR | 14738773 |
Spleen | RT-PCR | 14738773 |
Thymus | RT-PCR | 14738773 |
Lung | RT-PCR | 14738773 |
Muscle | RT-PCR | 14738773 |
Lung | qRT-PCR | 19813699 |
Published data of mRNA expression in neoplasias
Lung cancer Show
Tumor Subtype | Sample type | Frequency | Methodology | PMID |
---|---|---|---|---|
Adenocarcinoma |
8/20 (40%) | qRT-PCR | 16468707 | |
Squamous cell carcinoma |
11/20 (55%) | qRT-PCR | ||
Adenocarcinoma |
14/31 (45%) | RT-PCR | 16061866 | |
Large cell carcinoma |
0/2 (0%) | RT-PCR | ||
Squamous cell carcinoma |
1/15 (7%) | RT-PCR | ||
Lung carcinoma |
4/10 (40%) | RT-PCR | 14696120 | |
Adenocarcinoma |
2/3 (67%) | RT-PCR | 12479262 | |
Small cell lung carcinoma |
3/ 3 (100%) | RT-PCR | ||
Squamous cell carcinoma |
2/3 (67%) | RT-PCR | ||
Adenocarcinoma |
12/25 (48%) | qRT-PCR | 11753648 | |
Non small cell lung carcinoma |
12/30 (40%) | RT-PCR | 17666327 | |
Lung carcinoma-NSCLC |
12/30 (40%) | RT-PCR | 18803763 | |
Adenocarcinoma |
22/37 (59%) | Nested RT-PCR | 20704819 | |
Squamous cell carcinoma |
5/23 (22%) | Nested RT-PCR |
Melanocytic lesion Show
Tumor Subtype | Sample type | Frequency | Methodology | PMID |
---|---|---|---|---|
Atypical nevus |
3/5 (60%) | Nested RT-PCR | 11992404 | |
Melanoma |
Primary tumor | 0/5 (0%) | Nested RT-PCR | |
Melanoma |
Metastatic tumor | 14/23 (61%) | Nested RT-PCR | |
Nevus nevocellularis |
1/3 (33%) | Nested RT-PCR | ||
Melanoma |
1/9 (11%) | RT-PCR | 14696120 |
Sarcoma Show
Published data of mRNA expression in Cell Lines
ShowOrigin tissue | Cell Line ID | Frequency | Methodology | PMID |
---|---|---|---|---|
Breast carcinoma | MDA-MB-231 SK-BR-3 MDA-MB-468 |
3/6 (50%) | RT-PCR | 12479262 |
Lymphoma | HUT102 U937 |
2/5 (40%) | RT-PCR | 12479262 |
Ovarian carcinoma | OVCAR | 1/1 (100%) | RT-PCR | 12479262 |
Prostate carcinoma | LNCaP DU145 |
2/3 (66%) | RT-PCR | 12479262 |
Sarcoma (Ewing's) | EW1 EW2 EW3 SK-ES-1 |
4/4 (100%) | Nested RT-PCR | 11992404 |
Sarcoma (Ewing's) | RD-ES TC32 TC71 LD 5838 LG SB |
7/8 (87%) | Northern blot | 10987281 |
Sarcoma (Osteosarcoma) | Saos U20S |
2/5 (40%) | Northern blot | 10987281 |
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