mRNA expression
Gene:
CTCFL (official gene symbol)Other symbol:
CTCFLCT family:
CT27CT identifier:
CT27Aliases from NCBI:
BORIS , CTCF-T , dJ579F20.2 , MGC163358Gene expression pattern ? : Testis-selective
High-throughput data (expression in cancer samples)
SAGE(short, 10 nt tags) Show
SAGE(long, 17 nt tags) Show
MPSS (short, 13 nt tags) Show
EST Show
Validation by Ludwig Institute of Cancer Research of mRNA expression in normal tissues and cell lines (RT-PCR)
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The figures shown in this section represent a standardized analysis of all reported CT-antigens in the same set of mRNA preparations from
normal human tissues and a selection of human cancer cell lines. The analysis was done by RT-PCR using the primer pairs indicated for each gene.
A total of 1.0 �g of RNA was reverse-transcribed into cDNA using the Omniscript RT kit (Qiagen, Valencia, CA) using oligo (dT)18 primers
(Invitrogen, Carlsbad, CA). JumpStart REDTaq� ReadyMix-(Sigma Aldrich, St. Louis,MO) was used for amplification according to the manufacturer's
instructions. Samples were amplified with a precycling hold at 95oC for 3 min, followed by 35 specific cycles of denaturation at 95oC
for 15 seconds,annealing for 30 seconds (10 cycles at 60oC, 10 cycles at 58oC and 15 cycles at 56oC) and extension at 72oC for 30 seconds followed by a final
extension step at 72oC for 7 minutes. The RT-PCR products were run on 1.5% agarose gels and stained by ethidium bromide. |
Published data of mRNA expression in normal tissues
ShowTissue | Methodology | PMID |
---|---|---|
Testis | RT-PCR | 14738373 |
Prostate | RT-PCR | 14738373 |
Pancreas | RT-PCR | 14738373 |
Thymus | RT-PCR | 14738373 |
Kidney | RT-PCR | 14738373 |
Testis | Northern blot | 12011441 |
Testis | qRT-PCR | 18467432 |
Ovary | qRT-PCR | 18467432 |
Oocyte | qRT-PCR | 18467432 |
Testis | qRT-PCR | 21811597 |
Bladder | qRT-PCR | 21811597 |
Brain | qRT-PCR | 21811597 |
Cervix | qRT-PCR | 21811597 |
Colon | qRT-PCR | 21811597 |
Esophagus | qRT-PCR | 21811597 |
Kidney | qRT-PCR | 21811597 |
Liver | qRT-PCR | 21811597 |
Ovary | qRT-PCR | 21811597 |
Placenta | qRT-PCR | 21811597 |
Prostate | qRT-PCR | 21811597 |
Skeletal muscle | qRT-PCR | 21811597 |
Small intestine | qRT-PCR | 21811597 |
Spleen | qRT-PCR | 21811597 |
Thymus | qRT-PCR | 21811597 |
Thyroid | qRT-PCR | 21811597 |
Trachea | qRT-PCR | 21811597 |
Keratinocytes (cultured) | RT-PCR | 22676270 |
Skin | RT-PCR | 22676270 |
Testis | RT-PCR | 22676270 |
Published data of mRNA expression in neoplasias
Brain cancer Show
Tumor Subtype | Sample type | Frequency | Methodology | PMID |
---|---|---|---|---|
Glioblastoma multiforme |
7/48 (15%) | RT-PCR | 23592437 |
Breast cancer Show
Tumor Subtype | Sample type | Frequency | Methodology | PMID |
---|---|---|---|---|
Breast carcinoma |
41/58 (71%) | qRT-PCR | 18195709 |
Gastric cancer Show
Tumor Subtype | Sample type | Frequency | Methodology | PMID |
---|---|---|---|---|
Gastrict carcinoma |
10/10 (100%) | RT-PCR | 21495859 |
Gynecological cancer Show
Tumor Subtype | Sample type | Frequency | Methodology | PMID |
---|---|---|---|---|
Endometrial cancer |
73/95 (77%) | RT-PCR | 17363524 | |
Uterine mixed mesodermal tumor |
24/ 31 (77%) | RT-PCR |
Head & Neck cancer Show
Tumor Subtype | Sample type | Frequency | Methodology | PMID |
---|---|---|---|---|
Squamous cell carcinoma |
Primary tumor | 10/57 (17%) | RT-PCR | 20715104 |
Lung cancer Show
Tumor Subtype | Sample type | Frequency | Methodology | PMID |
---|---|---|---|---|
Non small cell lung carcinoma |
10/28 (36%) | Northern blot | 22792300 |
Melanocytic lesion Show
Tumor Subtype | Sample type | Frequency | Methodology | PMID |
---|---|---|---|---|
Melanoma |
17/63 (27%) | qRT-PCR | 17957795 |
Published data of mRNA expression in Cell Lines
ShowOrigin tissue | Cell Line ID | Frequency | Methodology | PMID |
---|---|---|---|---|
Breast carcinoma | MCF7 MDA231 MDA435 |
RT-PCR | 21495859 | |
Breast carcinoma | 18/18 (100%) | RT-PCR | 18195709 | |
Colon carcinoma | SNU769B DLD1 LoVo HCT116 |
RT-PCR | 21495859 | |
Colorectal carcinoma | C99 HCT55 HCT116 HCT15 Lovo |
qRT-PCR | 21811597 | |
Esophageal carcinoma | 7/15 (47%) | RT-PCR | 22676270 | |
Fibroblast | MRC5 | qRT-PCR | 21811597 | |
Gastrict carcinoma | AGS SNU719 |
RT-PCR | 21495859 | |
Glioblastoma | U-87MG U-118MG U-138-MG U251 CRL-2365 CRL-2610 CRL-2020 CRL-2611 |
qRT-PCR | 21811597 | |
Lung carcinoma | H322 A549 H358 H1299 H345 H889 H526 H2227 SK-LC-17 |
11/15 (73%) | RT-PCR | 16140944 |
Lung carcinoma | A549 H358 H460 H1299 |
RT-PCR | 21495859 | |
Medulloblastoma | Daoy | qRT-PCR | 21811597 | |
Melanoma | 928-MEL | RT-PCR | 21495859 | |
Melanoma | A375M Mel501 SBCL2 UISOMel16 WM115 WM1158 WM278 |
qRT-PCR | 21811597 | |
Myelogenous leukemia | K562 | qRT-PCR | 21659515 | |
Myeloma | Delta47 MM-S1 |
qRT-PCR | 21659515 | |
Neural stem cell | Neural stem cell |
qRT-PCR | 21811597 | |
Neuroblastoma | ACN LAN-1 |
qRT-PCR | 21811597 | |
Neurons | neurons | qRT-PCR | 21811597 | |
Non small cell lung carcinoma | EKVX | qRT-PCR | 21659515 | |
Osteosarcoma | U20S | RT-PCR | 21495859 | |
Ovarian carcinoma | OVCAR8 | qRT-PCR | 21659515 | |
Prostate carcinoma | Du45 Pnt2 |
qRT-PCR | 21811597 | |
Prostate carcinoma | DU145 PC-3 |
RT-PCR | 21495859 |
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