mRNA expression
Gene:
MAGEC1 (official gene symbol)Other symbol:
MAGEC1CT family:
CT7CT identifier:
CT7.1Aliases from NCBI:
CT7 , MAGE-C1 , MGC39366Gene expression pattern ? : Testis-restricted
High-throughput data (expression in cancer samples)
SAGE(short, 10 nt tags) Show
SAGE(long, 17 nt tags) Show
MPSS (short, 13 nt tags) Show
EST Show
Validation by Ludwig Institute of Cancer Research of mRNA expression in normal tissues and cell lines (RT-PCR)
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The figures shown in this section represent a standardized analysis of all reported CT-antigens in the same set of mRNA preparations from
normal human tissues and a selection of human cancer cell lines. The analysis was done by RT-PCR using the primer pairs indicated for each gene.
A total of 1.0 �g of RNA was reverse-transcribed into cDNA using the Omniscript RT kit (Qiagen, Valencia, CA) using oligo (dT)18 primers
(Invitrogen, Carlsbad, CA). JumpStart REDTaq� ReadyMix-(Sigma Aldrich, St. Louis,MO) was used for amplification according to the manufacturer's
instructions. Samples were amplified with a precycling hold at 95oC for 3 min, followed by 35 specific cycles of denaturation at 95oC
for 15 seconds,annealing for 30 seconds (10 cycles at 60oC, 10 cycles at 58oC and 15 cycles at 56oC) and extension at 72oC for 30 seconds followed by a final
extension step at 72oC for 7 minutes. The RT-PCR products were run on 1.5% agarose gels and stained by ethidium bromide. |
Published data of mRNA expression in normal tissues
ShowTissue | Methodology | PMID |
---|---|---|
Testis | RT-PCR | 9485030 |
Testis | RT-PCR | 18237105 |
Spleen | RT-PCR | 18237105 |
Testis | RT-PCR | 11872084 |
Published data of mRNA expression in neoplasias
Hematologic malignacies Show
Tumor Subtype | Sample type | Frequency | Methodology | PMID |
---|---|---|---|---|
Myeloma |
30/39 (77%) | RT-PCR | 17137291 | |
Monoclonal gammopathy of undetermined significance (MGUS) |
1/6 (17%) | RT-PCR | 15761016 | |
Myeloma |
8/10 (80%) | RT-PCR | ||
Myeloma |
0/1 (0%) | RT-PCR | 15606517 | |
Myeloma |
9/29 (30%) | RT-PCR | 11872084 | |
Myeloma |
30/39 (77%) | RT-PCR | 18237105 | |
Myeloma |
59/91 (65%) | RT-PCR | 19190130 | |
Myeloma |
Newly diagnosed patient | 228/320 (70%) | Microarray | 21738656 |
Myeloma |
Relapse patient | 160/264 (61%) | Microarray | |
Adult T-cell leukemia/lymphoma (ATLL) |
0/33 (0%) | RT-PCR | 22323448 | |
Monoclonal gammopathy of undetermined significance (MGUS) |
0/4 (0%) | RT-PCR | 23180015 | |
Myeloma |
31/46 (67 %) | RT-PCR | ||
Solitary plasmacytoma |
1/5 (20%) | RT-PCR |
Brain cancer Show
Tumor Subtype | Sample type | Frequency | Methodology | PMID |
---|---|---|---|---|
Brain tumor |
1/9 (11%) | RT-PCR | 15606517 | |
Glioma |
0/30 (0%) | RT-PCR | 18240144 | |
Medulloblastomas |
7/25 (28%) | RT-PCR | 18426187 | |
Glioma |
5/45 (11%) | RT-PCR | 22534618 | |
Glioma |
0/42 (0%) | RT-PCR | ||
Meningioma |
0/26 (0%) | RT-PCR | ||
Meningioma |
3/26 (12%) | RT-PCR |
Hepatobiliary cancer Show
Tumor Subtype | Sample type | Frequency | Methodology | PMID |
---|---|---|---|---|
Hepatocellular carcinoma |
12/25 (48%) | RT-PCR | 15723723 |
Lung cancer Show
Tumor Subtype | Sample type | Frequency | Methodology | PMID |
---|---|---|---|---|
Adenocarcinoma |
4/22 (18%) | RT-PCR | 14512184 | |
Adenosquamous carcinoma |
0/1 (0%) | RT-PCR | ||
Large cell carcinoma |
1/6 (17%) | RT-PCR | ||
Small cell lung carcinoma |
1/4 (25%) | RT-PCR | ||
Squamous cell carcinoma |
3/13 (23%) | RT-PCR | ||
Non small cell lung carcinoma |
10/33 (30%) | RT-PCR | 10704737 | |
Adenocarcinoma |
23/147 (16%) | RT-PCR | 16299236 | |
Bronchioloalveolar / adenobronchioloalveolar carcinoma |
7/57 (12%) | RT-PCR | ||
Squamous cell carcinoma |
16/58 (28%) | RT-PCR | ||
Non small cell lung carcinoma |
101/546 (22%) | RT-PCR | 17137291 | |
Non small cell lung carcinoma |
15/95 (16%) | RT-PCR | 15606517 | |
Small cell lung carcinoma |
0/3 (0%) | RT-PCR | ||
Adenocarcinoma |
14/38 (37%) | Oligonucleotide microarray | 17208331 | |
Squamous cell carcinoma |
2/14 (14%) | Oligonucleotide microarray |
Melanocytic lesion Show
Tumor Subtype | Sample type | Frequency | Methodology | PMID |
---|---|---|---|---|
Melanoma |
Primary tumor | 7/46 (15%) | RT-PCR | 9485030 |
Melanoma |
Mucous membrane | 5/8 (62%) | RT-PCR | |
Melanoma |
Metastatic tumor | 31/59 (52%) | RT-PCR | |
Ocular melanoma |
0/9 (0%) | RT-PCR |
Ovarian cancer Show
Tumor Subtype | Sample type | Frequency | Methodology | PMID |
---|---|---|---|---|
Ovarian carcinoma |
0/3 (0%) | RT-PCR | 15606517 |
Testicular cancer Show
Tumor Subtype | Sample type | Frequency | Methodology | PMID |
---|---|---|---|---|
Seminoma |
9/9 (100%) | RT-PCR | 15606517 |
Published data of mRNA expression in Cell Lines
ShowOrigin tissue | Cell Line ID | Frequency | Methodology | PMID |
---|---|---|---|---|
Brain tumor-Glioblastoma | U-87-MG | 1/4 (25%) | RT-PCR | 17137291 |
Brain tumor-Glioma | SK-MG-01 | 1/1 (100%) | RT-PCR | 17137291 |
Breast carcinoma | CaMa | 1/3 (33%) | RT-PCR | 17137291 |
Choriocarcinoma | JEG-3 | 1/1 (100%) | RT-PCR | 17137291 |
Glioma | 1/13 (8%) | RT-PCR | 22534618 | |
Lung carcinoma | NCI-H128 NCI-H187 NCI-H82 SK-LC-02 SK-LC-05 SK-LC-06 SK-LC-07 SK-LC-13 SK-LC-14 SK-LC-17 |
10 /18 (55%) | RT-PCR | 17137291 |
Melanoma | SK-mel-2 SK-mel-10 SK-mel-23 SK-mel-30 SK-mel-37 SK-mel-75 SK-mel-95 SK-mel-106 SK-mel-108 SK-mel-10 |
16/32 (50%) | RT-PCR | 17137291 |
Myeloma | ARP-1 RPMI-8226 U266 MM1.s H929 KMS11 |
6/7 (86%) | RT-PCR | 17137291 |
Ovarian carcinoma | OV-CAR-3 SK-OV-3 |
2/4 (50%) | RT-PCR | 17137291 |
Sarcoma | SW872 | 1/7 (14%) | RT-PCR | 15298487 |
Sarcoma (Synovial) | SW-0982 SW-1045 |
2/3 (67%) | RT-PCR | 17137291 |
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